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Yayın Adaptive convolution kernel for artificial neural networks(Academic Press Inc., 2021-02) Tek, Faik Boray; Çam, İlker; Karlı, DenizMany deep neural networks are built by using stacked convolutional layers of fixed and single size (often 3 × 3) kernels. This paper describes a method for learning the size of convolutional kernels to provide varying size kernels in a single layer. The method utilizes a differentiable, and therefore backpropagation-trainable Gaussian envelope which can grow or shrink in a base grid. Our experiments compared the proposed adaptive layers to ordinary convolution layers in a simple two-layer network, a deeper residual network, and a U-Net architecture. The results in the popular image classification datasets such as MNIST, MNIST-CLUTTERED, CIFAR-10, Fashion, and ‘‘Faces in the Wild’’ showed that the adaptive kernels can provide statistically significant improvements on ordinary convolution kernels. A segmentation experiment in the Oxford-Pets dataset demonstrated that replacing ordinary convolution layers in a U-shaped network with 7 × 7 adaptive layers can improve its learning performance and ability to generalize.Yayın An adaptive locally connected neuron model: Focusing neuron(Elsevier B.V., 2021-01-02) Tek, Faik BorayThis paper presents a new artificial neuron model capable of learning its receptive field in the topological domain of inputs. The experiments include tests of focusing neuron networks of one or two hidden layers on synthetic and well-known image recognition data sets. The results demonstrated that the focusing neurons can move their receptive fields towards more informative inputs. In the simple two-hidden layer networks, the focusing layers outperformed the dense layers in the classification of the 2D spatial data sets. Moreover, the focusing networks performed better than the dense networks even when 70% of the weights were pruned. The tests on convolutional networks revealed that using focusing layers instead of dense layers for the classification of convolutional features may work better in some data sets.Yayın Automated diagnosis of Alzheimer’s Disease using OCT and OCTA: a systematic review(Institute of Electrical and Electronics Engineers Inc., 2024-08-06) Turkan, Yasemin; Tek, Faik Boray; Arpacı, Fatih; Arslan, Ozan; Toslak, Devrim; Bulut, Mehmet; Yaman, AylinRetinal optical coherence tomography (OCT) and optical coherence tomography angiography (OCTA) have emerged as promising, non-invasive, and cost-effective modalities for the early diagnosis of Alzheimer's disease (AD). However, a comprehensive review of automated deep learning techniques for diagnosing AD or mild cognitive impairment (MCI) using OCT/OCTA data is lacking. We addressed this gap by conducting a systematic review using the Preferred Reporting Items for Systematic Review and Meta-Analysis (PRISMA) guidelines. We systematically searched databases, including Scopus, PubMed, and Web of Science, and identified 16 important studies from an initial set of 4006 references. We then analyzed these studies through a structured framework, focusing on the key aspects of deep learning workflows for AD/MCI diagnosis using OCT-OCTA. This included dataset curation, model training, and validation methodologies. Our findings indicate a shift towards employing end-to-end deep learning models to directly analyze OCT/OCTA images in diagnosing AD/MCI, moving away from traditional machine learning approaches. However, we identified inconsistencies in the data collection methods across studies, leading to varied outcomes. We emphasize the need for longitudinal studies on early AD and MCI diagnosis, along with further research on interpretability tools to enhance model accuracy and reliability for clinical translation.Yayın TURSpider: a Turkish Text-to-SQL dataset and LLM-based study(Institute of Electrical and Electronics Engineers Inc., 2024-11-25) Kanburoğlu, Ali Buğra; Tek, Faik BorayThis paper introduces TURSpider, a novel Turkish Text-to-SQL dataset developed through human translation of the widely used Spider dataset, aimed at addressing the current lack of complex, cross-domain SQL datasets for the Turkish language. TURSpider incorporates a wide range of query difficulties, including nested queries, to create a comprehensive benchmark for Turkish Text-to-SQL tasks. The dataset enables cross-language comparison and significantly enhances the training and evaluation of large language models (LLMs) in generating SQL queries from Turkish natural language inputs. We fine-tuned several Turkish-supported LLMs on TURSpider and evaluated their performance in comparison to state-of-the-art models like GPT-3.5 Turbo and GPT-4. Our results show that fine-tuned Turkish LLMs demonstrate competitive performance, with one model even surpassing GPT-based models on execution accuracy. We also apply the Chain-of-Feedback (CoF) methodology to further improve model performance, demonstrating its effectiveness across multiple LLMs. This work provides a valuable resource for Turkish NLP and addresses specific challenges in developing accurate Text-to-SQL models for low-resource languages.
