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Yayın Developing an efficient deep neural network for automatic detection of COVID-19 using chest X-ray images(Elsevier B.V., 2021-06) Sheykhivand, Sobhan; Mousavi, Zohreh; Mojtahedi, Sina; Yousefi Rezaii, Tohid; Farzamnia, Ali; Meshgini, Saeed; Saad, IsmailThe novel coronavirus (COVID-19) could be described as the greatest human challenge of the 21st century. The development and transmission of the disease have increased mortality in all countries. Therefore, a rapid diagnosis of COVID-19 is necessary to treat and control the disease. In this paper, a new method for the automatic identification of pneumonia (including COVID-19) is presented using a proposed deep neural network. In the proposed method, the chest X-ray images are used to separate 2–4 classes in 7 different and functional scenarios according to healthy, viral, bacterial, and COVID-19 classes. In the proposed architecture, Generative Adversarial Networks (GANs) are used together with a fusion of the deep transfer learning and LSTM networks, without involving feature extraction/selection for classification of pneumonia. We have achieved more than 90% accuracy for all scenarios except one and also achieved 99% accuracy for separating COVID-19 from healthy group. We also compared our deep proposed network with other deep transfer learning networks (including Inception-ResNet V2, Inception V4, VGG16 and MobileNet) that have been recently widely used in pneumonia detection studies. The results based on the proposed network were very promising in terms of accuracy, precision, sensitivity, and specificity compared to the other deep transfer learning approaches. Depending on the high performance of the proposed method, it can be used during the treatment of patients.Yayın CNN-Based deep learning architecture for electromagnetic imaging of rough surface profiles(IEEE, 2022-10) Aydın, İzde; Budak, Güven; Sefer, Ahmet; Yapar, AliA convolutional neural network (CNN) based deep learning (DL) technique for electromagnetic imaging of rough surfaces separating two dielectric media is presented. The direct scattering problem is formulated through the conventional integral equations and the synthetic scattered field data is produced by a fast numerical solution technique which is based on Method of Moments (MoM). Two different special CNN architectures are designed and implemented for the solution of the inverse rough surface imaging problem wherein both random and deterministic rough surface profiles can be imaged. It is shown by a comprehensive numerical analysis that the proposed deep-learning (DL) inversion scheme is very effective and robust.Yayın Adaptive convolution kernel for artificial neural networks(Academic Press Inc., 2021-02) Tek, Faik Boray; Çam, İlker; Karlı, DenizMany deep neural networks are built by using stacked convolutional layers of fixed and single size (often 3 × 3) kernels. This paper describes a method for learning the size of convolutional kernels to provide varying size kernels in a single layer. The method utilizes a differentiable, and therefore backpropagation-trainable Gaussian envelope which can grow or shrink in a base grid. Our experiments compared the proposed adaptive layers to ordinary convolution layers in a simple two-layer network, a deeper residual network, and a U-Net architecture. The results in the popular image classification datasets such as MNIST, MNIST-CLUTTERED, CIFAR-10, Fashion, and ‘‘Faces in the Wild’’ showed that the adaptive kernels can provide statistically significant improvements on ordinary convolution kernels. A segmentation experiment in the Oxford-Pets dataset demonstrated that replacing ordinary convolution layers in a U-shaped network with 7 × 7 adaptive layers can improve its learning performance and ability to generalize.Yayın Malaria parasite detection with deep transfer learning(IEEE, 2018-12-06) Var, Esra; Tek, Faik BorayThis study aims to automatically detect malaria parasites (Plasmodium sp) on images taken from Giemsa stained blood smears. Deep learning methods provide limited performance when sample size is low. In transfer learning, visual features are learned from large general data sets, and problem-specific classification problem can be solved successfully in restricted problem specific data sets. In this study, we apply transfer learning method to detect and classify malaria parasites. We use a popular pre-trained CNN model VGG19. We trained the model for 20 epoch on 1428 P Vivax, 1425 P Ovule, 1446 E Falciparum, 1450 P Malariae and 1440 non-parasite samples. The transfer learning model achieves %80, %83, %86, %75 precision and 83%, 86%, 86%, 79% f-measure on 19 test images.Yayın Unreasonable effectiveness of last hidden layer activations for adversarial robustness(Institute of Electrical and Electronics Engineers Inc., 2022) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerIn standard Deep Neural Network (DNN) based classifiers, the general convention is to omit the activation function in the last (output) layer and directly apply the softmax function on the logits to get the probability scores of each class. In this type of architectures, the loss value of the classifier against any output class is directly proportional to the difference between the final probability score and the label value of the associated class. Standard White-box adversarial evasion attacks, whether targeted or untargeted, mainly try to exploit the gradient of the model loss function to craft adversarial samples and fool the model. In this study, we show both mathematically and experimentally that using some widely known activation functions in the output layer of the model with high temperature values has the effect of zeroing out the gradients for both targeted and untargeted attack cases, preventing attackers from exploiting the model's loss function to craft adversarial samples. We've experimentally verified the efficacy of our approach on MNIST (Digit), CIFAR10 datasets. Detailed experiments confirmed that our approach substantially improves robustness against gradient-based targeted and untargeted attack threats. And, we showed that the increased non-linearity at the output layer has some ad-ditional benefits against some other attack methods like Deepfool attack.Yayın Closeness and uncertainty aware adversarial examples detection in adversarial machine learning(Elsevier Ltd, 2022-07) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerWhile deep learning models are thought to be resistant to random perturbations, it has been demonstrated that these architectures are vulnerable to deliberately crafted perturbations, albeit being quasi-imperceptible. These vulnerabilities make it challenging to deploy Deep Neural Network (DNN) models in security-critical areas. Recently, many research studies have been conducted to develop defense techniques enabling more robust models. In this paper, we target detecting adversarial samples by differentiating them from their clean equivalents. We investigate various metrics for detecting adversarial samples. We first leverage moment-based predictive uncertainty estimates of DNN classifiers derived through Monte-Carlo (MC) Dropout Sampling. We also introduce a new method that operates in the subspace of deep features obtained by the model. We verified the effectiveness of our approach on different datasets. Our experiments show that these approaches complement each other, and combined usage of all metrics yields 99 % ROC-AUC adversarial detection score for well-known attack algorithms.Yayın Recovery of impenetrable rough surface profiles via CNN-based deep learning architecture(Taylor and Francis Ltd., 2022-08-18) Aydın, İzde; Budak, Güven; Sefer, Ahmet; Yapar, AliIn this paper, a convolutional neural network (CNN)-based deep learning (DL) architecture for the solution of an electromagnetic inverse problem related to imaging of the shape of the perfectly electric conducting (PEC) rough surfaces is addressed. The rough surface is illuminated by a plane wave and scattered field data is obtained synthetically through the numerical solution of surface integral equations. An effective CNN-DL architecture is implemented through the modelling of the rough surface variation in terms of convenient spline type base functions. The algorithm is numerically tested with various scenarios including amplitude only data and shown that it is very effective and useful.Yayın Animal sound classification using a convolutional neural network(IEEE, 2018-12-06) Şaşmaz, Emre; Tek, Faik BorayIn this paper, we investigate the problem of animal sound classification using deep learning and propose a system based on convolutional neural network architecture. As the input to the network, sound files were preprocessed to extract Mel Frequency Cepstral Coefficients (MFCC) using LibROSA library. To train and test the system we have collected 875 animal sound samples from an online sound source site for 10 different animal types. We report classification confusion matrices and the results obtained by different gradient descent optimizers. The best accuracy of 75% was obtained by Nesterov-accelerated Adaptive Moment Estimation (Nadam).Yayın Uzaktan algılanan görüntülerde bina yoğunluğu kestirimi için derin öğrenme(Institute of Electrical and Electronics Engineers Inc., 2019-09) Süberk, Nilay Tuğçe; Ateş, Hasan FehmiBu bildiri, derin öğrenme yöntemleri uygulayarak uzaktan algılamalı optik görüntülerde bina yoğunluğunun noktasal olarak kestirilmesi ile ilgilidir. Bu çalışma kapsamında, evrişimsel sinir ağına (ESA) dayalı derin öğrenme yöntemlerine başvurulmuştur. Önceden eğitilmiş, VGG-16 ve FCN-8s derin mimarileri bu probleme uyarlanmış ve ince ayar verilerek eğitilmiştir. Kestirilen değerler yerleşim bölgelerinde bina yoğunluk haritası oluşturmak için kullanılmıştır. Her iki mimarinin karşılaştırmalı benzetim sonuçları, güdümlü eğitim için binaları gösteren detaylı haritalara ihtiyaç duyulmadan hassas yoğunluk kestirimi yapılabileceğini göstermektedir.Yayın Uncertainty as a Swiss army knife: new adversarial attack and defense ideas based on epistemic uncertainty(Springer, 2022-04-02) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerAlthough state-of-the-art deep neural network models are known to be robust to random perturbations, it was verified that these architectures are indeed quite vulnerable to deliberately crafted perturbations, albeit being quasi-imperceptible. These vulnerabilities make it challenging to deploy deep neural network models in the areas where security is a critical concern. In recent years, many research studies have been conducted to develop new attack methods and come up with new defense techniques that enable more robust and reliable models. In this study, we use the quantified epistemic uncertainty obtained from the model's final probability outputs, along with the model's own loss function, to generate more effective adversarial samples. And we propose a novel defense approach against attacks like Deepfool which result in adversarial samples located near the model's decision boundary. We have verified the effectiveness of our attack method on MNIST (Digit), MNIST (Fashion) and CIFAR-10 datasets. In our experiments, we showed that our proposed uncertainty-based reversal method achieved a worst case success rate of around 95% without compromising clean accuracy.
