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Yayın Convolutional attention network for MRI-based Alzheimer's disease classification and its interpretability analysis(IEEE, 2021-09-17) Türkan, Yasemin; Tek, Faik BorayNeuroimaging techniques, such as Magnetic Resonance Imaging (MRI) and Positron Emission Tomography (PET), help to identify Alzheimer's disease (AD). These techniques generate large-scale, high-dimensional, multimodal neuroimaging data, which is time-consuming and difficult to interpret and classify. Therefore, interest in deep learning approaches for the classification of 3D structural MRI brain scans has grown rapidly. In this research study, we improved the 3D VGG model proposed by Korolev et al. [2]. We increased the filters in the 3D convolutional layers and then added an attention mechanism for better classification. We compared the performance of the proposed approaches for the classification of Alzheimer's disease versus mild cognitive impairments and normal cohorts on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset. We observed that both the accuracy and area under curve results improved with the proposed models. However, deep neural networks are black boxes that produce predictions that require further explanation for medical usage. We compared the 3D-data interpretation capabilities of the proposed models using four different interpretability methods: Occlusion, 3D Ultrametric Contour Map, 3D Gradient-Weighted Class Activation Mapping, and SHapley Additive explanations (SHAP). We observed that explanation results differed in different network models and data classes.Yayın Uyarlanır yerel bağlı katman kullanan dikkat tabanlı derin ağ ile sesli komut tanıma(Institute of Electrical and Electronics Engineers Inc., 2020-10-05) Turkan, Yasemin; Tek, Faik BoraySesli komut tanıma insan-makine ara yüzüyle ilişkili aktif bir araştırma konusudur. Dikkat tabanlı derin ağlar ile bu tür problemler başarılı bir şekilde çözülebilmektedir. Bu çalışmada, var olan bir dikkat tabanlı derin ağ yöntemi, uyarlanır yerel bağlı (odaklanan) katman kullanılarak daha da geliştirilmiştir. Orijinal yönteminde sınandığı Google ve Kaggle sesli komut veri setlerinde karşılaştırmalı olarak yapılan deneylerde önerdiğimiz uyarlanır yerel bağlı katman kullanan dikkat tabanlı ağın tanıma doğruluğunu %2.6 oranında iyileştirdiği gözlemledik.Yayın Adaptive convolution kernel for artificial neural networks(Academic Press Inc., 2021-02) Tek, Faik Boray; Çam, İlker; Karlı, DenizMany deep neural networks are built by using stacked convolutional layers of fixed and single size (often 3 × 3) kernels. This paper describes a method for learning the size of convolutional kernels to provide varying size kernels in a single layer. The method utilizes a differentiable, and therefore backpropagation-trainable Gaussian envelope which can grow or shrink in a base grid. Our experiments compared the proposed adaptive layers to ordinary convolution layers in a simple two-layer network, a deeper residual network, and a U-Net architecture. The results in the popular image classification datasets such as MNIST, MNIST-CLUTTERED, CIFAR-10, Fashion, and ‘‘Faces in the Wild’’ showed that the adaptive kernels can provide statistically significant improvements on ordinary convolution kernels. A segmentation experiment in the Oxford-Pets dataset demonstrated that replacing ordinary convolution layers in a U-shaped network with 7 × 7 adaptive layers can improve its learning performance and ability to generalize.Yayın Closeness and uncertainty aware adversarial examples detection in adversarial machine learning(Elsevier Ltd, 2022-07) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerWhile deep learning models are thought to be resistant to random perturbations, it has been demonstrated that these architectures are vulnerable to deliberately crafted perturbations, albeit being quasi-imperceptible. These vulnerabilities make it challenging to deploy Deep Neural Network (DNN) models in security-critical areas. Recently, many research studies have been conducted to develop defense techniques enabling more robust models. In this paper, we target detecting adversarial samples by differentiating them from their clean equivalents. We investigate various metrics for detecting adversarial samples. We first leverage moment-based predictive uncertainty estimates of DNN classifiers derived through Monte-Carlo (MC) Dropout Sampling. We also introduce a new method that operates in the subspace of deep features obtained by the model. We verified the effectiveness of our approach on different datasets. Our experiments show that these approaches complement each other, and combined usage of all metrics yields 99 % ROC-AUC adversarial detection score for well-known attack algorithms.Yayın Exploiting epistemic uncertainty of the deep learning models to generate adversarial samples(Springer, 2022-03) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerDeep neural network (DNN) architectures are considered to be robust to random perturbations. Nevertheless, it was shown that they could be severely vulnerable to slight but carefully crafted perturbations of the input, termed as adversarial samples. In recent years, numerous studies have been conducted in this new area called ``Adversarial Machine Learning” to devise new adversarial attacks and to defend against these attacks with more robust DNN architectures. However, most of the current research has concentrated on utilising model loss function to craft adversarial examples or to create robust models. This study explores the usage of quantified epistemic uncertainty obtained from Monte-Carlo Dropout Sampling for adversarial attack purposes by which we perturb the input to the shifted-domain regions where the model has not been trained on. We proposed new attack ideas by exploiting the difficulty of the target model to discriminate between samples drawn from original and shifted versions of the training data distribution by utilizing epistemic uncertainty of the model. Our results show that our proposed hybrid attack approach increases the attack success rates from 82.59% to 85.14%, 82.96% to 90.13% and 89.44% to 91.06% on MNIST Digit, MNIST Fashion and CIFAR-10 datasets, respectively.
