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Yayın Developing an efficient deep neural network for automatic detection of COVID-19 using chest X-ray images(Elsevier B.V., 2021-06) Sheykhivand, Sobhan; Mousavi, Zohreh; Mojtahedi, Sina; Yousefi Rezaii, Tohid; Farzamnia, Ali; Meshgini, Saeed; Saad, IsmailThe novel coronavirus (COVID-19) could be described as the greatest human challenge of the 21st century. The development and transmission of the disease have increased mortality in all countries. Therefore, a rapid diagnosis of COVID-19 is necessary to treat and control the disease. In this paper, a new method for the automatic identification of pneumonia (including COVID-19) is presented using a proposed deep neural network. In the proposed method, the chest X-ray images are used to separate 2–4 classes in 7 different and functional scenarios according to healthy, viral, bacterial, and COVID-19 classes. In the proposed architecture, Generative Adversarial Networks (GANs) are used together with a fusion of the deep transfer learning and LSTM networks, without involving feature extraction/selection for classification of pneumonia. We have achieved more than 90% accuracy for all scenarios except one and also achieved 99% accuracy for separating COVID-19 from healthy group. We also compared our deep proposed network with other deep transfer learning networks (including Inception-ResNet V2, Inception V4, VGG16 and MobileNet) that have been recently widely used in pneumonia detection studies. The results based on the proposed network were very promising in terms of accuracy, precision, sensitivity, and specificity compared to the other deep transfer learning approaches. Depending on the high performance of the proposed method, it can be used during the treatment of patients.Yayın Derin öznitelikler ile anlambilimsel görüntü bölütleme(Institute of Electrical and Electronics Engineers Inc., 2018-07-05) Sünetci, Sercan; Ateş, Hasan FehmiDerin evrişimsel sinir ağları (ESA) pek çok sınıflandırma probleminde olduğu gibi anlambilimsel görüntü bölütlemede de çok ciddi başarı göstermiştir. Fakat derin ağların eğitilmesi hem zaman alıcıdır hem de geniş bir eğitim veri kümesine ihtiyaç duymaktadır. Bir veri kümesinde eğitilen ağın başka bir görev ya da veri kümesine uygulanabilmesi için transfer öğrenme ile yeniden eğitilmesi gerekmektedir. Transfer öğrenmeye alternatif olarak ağ katmanlarından çıkarılan öznitelik vektörleri doğrudan sınıflandırma amaçlı kullanılabilir. Bu bildiride genel ESA mimarilerinden elde edilen özniteliklerin eğitim gerektirmeyen bir görüntü etiketleme yönteminde kullanılmasının sınıflandırma başarımına katkısı incelenmiştir. Derin ağlarda ‘öğrenilmiş’ öznitelikler ile SIFT gibi ‘el yapımı’ özniteliklerin birlikte kullanılmasının etiketleme doğruluğunu artırdığı gösterilmiştir. Varolan ön eğitimli ağların kullanılması sayesinde önerilen yaklaşım herhangi bir veri kümesinde yeniden eğitime gerek olmadan kolayca uygulanabilmektedir. Önerilen yöntem iki veri kümesinde test edilmiş ve etiketleme doğruluğu benzer yöntemlerle karşılaştırmalı olarak sunulmuştur.Yayın Convolutional attention network for MRI-based Alzheimer's disease classification and its interpretability analysis(IEEE, 2021-09-17) Türkan, Yasemin; Tek, Faik BorayNeuroimaging techniques, such as Magnetic Resonance Imaging (MRI) and Positron Emission Tomography (PET), help to identify Alzheimer's disease (AD). These techniques generate large-scale, high-dimensional, multimodal neuroimaging data, which is time-consuming and difficult to interpret and classify. Therefore, interest in deep learning approaches for the classification of 3D structural MRI brain scans has grown rapidly. In this research study, we improved the 3D VGG model proposed by Korolev et al. [2]. We increased the filters in the 3D convolutional layers and then added an attention mechanism for better classification. We compared the performance of the proposed approaches for the classification of Alzheimer's disease versus mild cognitive impairments and normal cohorts on the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset. We observed that both the accuracy and area under curve results improved with the proposed models. However, deep neural networks are black boxes that produce predictions that require further explanation for medical usage. We compared the 3D-data interpretation capabilities of the proposed models using four different interpretability methods: Occlusion, 3D Ultrametric Contour Map, 3D Gradient-Weighted Class Activation Mapping, and SHapley Additive explanations (SHAP). We observed that explanation results differed in different network models and data classes.Yayın Uyarlanır yerel bağlı katman kullanan dikkat tabanlı derin ağ ile sesli komut tanıma(Institute of Electrical and Electronics Engineers Inc., 2020-10-05) Turkan, Yasemin; Tek, Faik BoraySesli komut tanıma insan-makine ara yüzüyle ilişkili aktif bir araştırma konusudur. Dikkat tabanlı derin ağlar ile bu tür problemler başarılı bir şekilde çözülebilmektedir. Bu çalışmada, var olan bir dikkat tabanlı derin ağ yöntemi, uyarlanır yerel bağlı (odaklanan) katman kullanılarak daha da geliştirilmiştir. Orijinal yönteminde sınandığı Google ve Kaggle sesli komut veri setlerinde karşılaştırmalı olarak yapılan deneylerde önerdiğimiz uyarlanır yerel bağlı katman kullanan dikkat tabanlı ağın tanıma doğruluğunu %2.6 oranında iyileştirdiği gözlemledik.Yayın Convolutional neural network (CNN) algorithm based facial emotion recognition (FER) system for FER-2013 dataset(IEEE, 2022-11-18) Ezerceli, Özay; Eskil, Mustafa TanerFacial expression recognition (FER) is the key to understanding human emotions and feelings. It is an active area of research since human thoughts can be collected, processed, and used in customer satisfaction, politics, and medical domains. Automated FER systems had been developed and have been used to recognize humans’ emotions but it has been a quite challenging problem in machine learning due to the high intra-class variation. The first models were using known methods such as Support Vector Machines (SVM), Bayes classifier, Fuzzy Techniques, Feature Selection, Artificial Neural Networks (ANN) in their models but still, some limitations affect the accuracy critically such as subjectivity, occlusion, pose, low resolution, scale, illumination variation, etc. The ability of CNN boosts FER accuracy. Deep learning algorithms have emerged as the greatest way to produce the best results in FER in recent years. Various datasets were used to train, test, and validate the models. FER2013, CK+, JAFFE and FERG are some of the most popular datasets. To improve the accuracy of FER models, one dataset or a mix of datasets has been employed. Every dataset includes limitations and issues that have an impact on the model that is trained for it. As a solution to this problem, our state-of-the-art model based on deep learning architectures, particularly convolutional neural network architectures (CNN) with supportive techniques has been implemented. The proposed model achieved 93.7% accuracy with the combination of FER2013 and CK+ datasets for FER2013.Yayın Adaptive convolution kernel for artificial neural networks(Academic Press Inc., 2021-02) Tek, Faik Boray; Çam, İlker; Karlı, DenizMany deep neural networks are built by using stacked convolutional layers of fixed and single size (often 3 × 3) kernels. This paper describes a method for learning the size of convolutional kernels to provide varying size kernels in a single layer. The method utilizes a differentiable, and therefore backpropagation-trainable Gaussian envelope which can grow or shrink in a base grid. Our experiments compared the proposed adaptive layers to ordinary convolution layers in a simple two-layer network, a deeper residual network, and a U-Net architecture. The results in the popular image classification datasets such as MNIST, MNIST-CLUTTERED, CIFAR-10, Fashion, and ‘‘Faces in the Wild’’ showed that the adaptive kernels can provide statistically significant improvements on ordinary convolution kernels. A segmentation experiment in the Oxford-Pets dataset demonstrated that replacing ordinary convolution layers in a U-shaped network with 7 × 7 adaptive layers can improve its learning performance and ability to generalize.Yayın Unreasonable effectiveness of last hidden layer activations for adversarial robustness(Institute of Electrical and Electronics Engineers Inc., 2022) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerIn standard Deep Neural Network (DNN) based classifiers, the general convention is to omit the activation function in the last (output) layer and directly apply the softmax function on the logits to get the probability scores of each class. In this type of architectures, the loss value of the classifier against any output class is directly proportional to the difference between the final probability score and the label value of the associated class. Standard White-box adversarial evasion attacks, whether targeted or untargeted, mainly try to exploit the gradient of the model loss function to craft adversarial samples and fool the model. In this study, we show both mathematically and experimentally that using some widely known activation functions in the output layer of the model with high temperature values has the effect of zeroing out the gradients for both targeted and untargeted attack cases, preventing attackers from exploiting the model's loss function to craft adversarial samples. We've experimentally verified the efficacy of our approach on MNIST (Digit), CIFAR10 datasets. Detailed experiments confirmed that our approach substantially improves robustness against gradient-based targeted and untargeted attack threats. And, we showed that the increased non-linearity at the output layer has some ad-ditional benefits against some other attack methods like Deepfool attack.Yayın Closeness and uncertainty aware adversarial examples detection in adversarial machine learning(Elsevier Ltd, 2022-07) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerWhile deep learning models are thought to be resistant to random perturbations, it has been demonstrated that these architectures are vulnerable to deliberately crafted perturbations, albeit being quasi-imperceptible. These vulnerabilities make it challenging to deploy Deep Neural Network (DNN) models in security-critical areas. Recently, many research studies have been conducted to develop defense techniques enabling more robust models. In this paper, we target detecting adversarial samples by differentiating them from their clean equivalents. We investigate various metrics for detecting adversarial samples. We first leverage moment-based predictive uncertainty estimates of DNN classifiers derived through Monte-Carlo (MC) Dropout Sampling. We also introduce a new method that operates in the subspace of deep features obtained by the model. We verified the effectiveness of our approach on different datasets. Our experiments show that these approaches complement each other, and combined usage of all metrics yields 99 % ROC-AUC adversarial detection score for well-known attack algorithms.Yayın Recovery of impenetrable rough surface profiles via CNN-based deep learning architecture(Taylor and Francis Ltd., 2022-08-18) Aydın, İzde; Budak, Güven; Sefer, Ahmet; Yapar, AliIn this paper, a convolutional neural network (CNN)-based deep learning (DL) architecture for the solution of an electromagnetic inverse problem related to imaging of the shape of the perfectly electric conducting (PEC) rough surfaces is addressed. The rough surface is illuminated by a plane wave and scattered field data is obtained synthetically through the numerical solution of surface integral equations. An effective CNN-DL architecture is implemented through the modelling of the rough surface variation in terms of convenient spline type base functions. The algorithm is numerically tested with various scenarios including amplitude only data and shown that it is very effective and useful.Yayın TENET: a new hybrid network architecture for adversarial defense(Springer Science and Business Media Deutschland GmbH, 2023-08) Tuna, Ömer Faruk; Çatak, Ferhat Özgür; Eskil, Mustafa TanerDeep neural network (DNN) models are widely renowned for their resistance to random perturbations. However, researchers have found out that these models are indeed extremely vulnerable to deliberately crafted and seemingly imperceptible perturbations of the input, referred to as adversarial examples. Adversarial attacks have the potential to substantially compromise the security of DNN-powered systems and posing high risks especially in the areas where security is a top priority. Numerous studies have been conducted in recent years to defend against these attacks and to develop more robust architectures resistant to adversarial threats. In this study, we propose a new architecture and enhance a recently proposed technique by which we can restore adversarial samples back to their original class manifold. We leverage the use of several uncertainty metrics obtained from Monte Carlo dropout (MC Dropout) estimates of the model together with the model’s own loss function and combine them with the use of defensive distillation technique to defend against these attacks. We have experimentally evaluated and verified the efficacy of our approach on MNIST (Digit), MNIST (Fashion) and CIFAR10 datasets. In our experiments, we showed that our proposed method reduces the attack’s success rate lower than 5% without compromising clean accuracy.
